SNP Profiles of PA 70 [PER] View Data

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_Input profile	TT	CC	AA	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
1._PA_70_[PER]	_	_	AA	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
2._RUQ_33	_	_	AA	GG	CC	_	AA	CC	AG	CC	_	_	AA	_
3._PA_70_[PER]	_	_	AA	GG	CC	_	AA	_	AG	CC	_	_	AA	_
4._GC-04-053-3-17	TT	CC	AA	GG	CC	GG	AA	CC	AG	CC	GG	GG	AA	CC
5._RUQ_33	_	_	AA	_	_	_	_	_	AG	_	GG	_	_	_
6._PA70[PER]	_	_	AA	_	CC	GG	AA	GG	AG	_	_	GG	AA	CC
7._PA_70_[PER]	_	_	AA	GT	CC	_	AA	CG	AG	CT	_	_	AT	_
8._GC-04-053-3-17	CT	AA	AA	GT	CC	AG	AA	CG	AG	CT	AG	AA	AT	CG
9._GC-04-53-3-17	AA	CC	AA	CC	GG	GG	AA	GG	AG	GG	GG	GG	AA	GG
10._RUQ_33	AA	CC	AA	CC	GG	GG	AA	GG	AG	GG	GG	GG	AA	GG
11._MITC-000025	AA	CC	AA	CC	GG	GG	AA	GG	AG	GG	GG	GG	AA	GG
12._MITC-000026	AA	CC	AA	CC	GG	GG	AA	GG	AG	GG	GG	GG	AA	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	CC	AA	CC	AG	GG	AC	GG	AG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	TT	GG	CG	AC	CT	TT	CC	GG	GG	TT	AA	GG
1._PA_70_[PER]	AA	AA	TT	GG	CG	AC	_	TT	_	GG	_	_	_	GG
2._RUQ_33	AA	AA	TT	GG	CG	AC	_	TT	_	GG	_	_	_	GG
3._PA_70_[PER]	AA	AA	TT	GG	CG	AC	_	TT	_	GG	_	_	_	GG
4._GC-04-053-3-17	AA	AA	TT	GG	CG	AC	CT	TT	CC	GG	GG	TT	AA	GG
5._RUQ_33	_	AA	_	_	CG	AC	CT	_	CC	GG	GG	_	AA	GG
6._PA70[PER]	_	_	_	_	CG	AC	CT	_	_	_	_	_	_	CC
7._PA_70_[PER]	AG	CC	TT	TT	CC	AC	_	TT	_	GT	_	_	_	CG
8._GC-04-053-3-17	AG	CC	TT	TT	CC	AC	CT	TT	CC	GT	GG	GT	AC	CG
9._GC-04-53-3-17	_	AA	_	CC	CG	AC	AG	AA	_	CC	GG	AA	AA	CC
10._RUQ_33	_	AA	_	CC	CG	AC	AG	AA	_	CC	GG	AA	AA	CC
11._MITC-000025	_	AA	_	CC	CG	AC	AG	AA	_	CC	GG	AA	AA	CC
12._MITC-000026	_	AA	_	CC	CG	AC	AG	AA	_	CC	GG	AA	AA	CC
13._PA_70_[PER]_Fld#_185_Plt#_1	_	AA	_	_	GG	CC	GG	AA	_	CC	AG	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	GG	AG	CC	CC	GG	GG	TT	TT	CT	CC	CT	GG
1._PA_70_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
2._RUQ_33	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
3._PA_70_[PER]	_	CC	_	AG	_	CC	_	_	_	TT	_	_	CT	GG
4._GC-04-053-3-17	CC	CC	GG	AG	CT	CC	GG	GG	TT	TT	TT	CC	CT	GG
5._RUQ_33	_	_	GG	AG	CT	_	_	_	_	TT	_	_	_	GG
6._PA70[PER]	GG	CC	_	_	_	CC	_	GG	TT	_	_	CC	_	CC
7._PA_70_[PER]	_	CC	_	AG	_	TT	_	_	_	TT	_	_	CT	GG
8._GC-04-053-3-17	CG	CC	AA	AG	CT	TT	GT	AA	AA	TT	TT	TT	CT	GG
9._GC-04-53-3-17	_	GG	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CC
10._RUQ_33	_	GG	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CC
11._MITC-000025	_	GG	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CC
12._MITC-000026	_	GG	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CC
13._PA_70_[PER]_Fld#_185_Plt#_1	_	GG	GG	AG	_	GG	CC	GG	_	AA	AG	GG	AG	CG

	43
_Input profile	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._PA_70_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_33	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._PA_70_[PER]	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-04-053-3-17	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._RUQ_33	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._PA70[PER]	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._PA_70_[PER]	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-04-053-3-17	AA	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-04-53-3-17	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_33	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._MITC-000025	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._MITC-000026	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	AG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_70_[PER] RUQ_33

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_70_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_70_[PER] RUQ_33

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_70_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

4._PA_70_[PER] GC-04-053-3-17

97.7 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

5._PA_70_[PER] RUQ_33

97.1 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._PA_70_[PER] PA70[PER]

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

7._PA_70_[PER]

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-053-3-17

57 %
43 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

9._PA_70_[PER] GC-04-53-3-17

45.9 %
37 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

10._PA_70_[PER] RUQ_33

45.9 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._PA_70_[PER] MITC-000025

45.9 %
37 shared markers

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USDA-SHRS, United States of America

12._PA_70_[PER] MITC-000026

45.9 %
37 shared markers

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USDA-SHRS, United States of America

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

43.1 %
36 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP899	32	TcSNP998	33	TcSNP999	34	TcSNP1060	35	TcSNP1063
36	TcSNP1111	37	TcSNP1126	38	TcSNP1253	39	TcSNP1309	40	TcSNP1439
41	TcSNP1442	42	TcSNP1458	43	TcSNP1484